Merge branch 'main' into feat/75-theming

Union conflict at the end of tests/test_core.py -- both branches appended a
test block. Kept both, main's #72/#73 block first. Verified: 265 test
functions = 238 baseline + 15 (#77) + 12 (theming), no duplicates.

tests/test_core.py

@@ -2373,6 +2373,146 @@ def test_config_has_unfilled_placeholders_checks_env_too():
     assert c.config_has_unfilled_placeholders(cfg) is True
 
 
+# --------------------------------------------------------------------------- #
+# #72 -- a server value that isn't a JSON object must not take the load down
+# --------------------------------------------------------------------------- #
+@pytest.mark.parametrize("bad", ["not-a-dict", 123, ["a", "b"], None, True, 1.5])
+def test_extract_servers_survives_non_dict_server_value(bad):
+    entries = c.extract_servers({"mcpServers": {"foo": bad}})
+    assert len(entries) == 1
+    assert entries[0].name == "foo"
+    assert entries[0].data == {}
+    assert entries[0].malformed is True
+    assert entries[0].raw == bad
+
+
+def test_extract_servers_marks_only_the_bad_entry():
+    cfg = {"mcpServers": {"good": {"command": "npx"}, "bad": "oops"}}
+    by_name = {e.name: e for e in c.extract_servers(cfg)}
+    assert by_name["good"].malformed is False
+    assert by_name["good"].data == {"command": "npx"}
+    assert by_name["bad"].malformed is True
+
+
+def test_extract_servers_handles_malformed_disabled_entry():
+    entries = c.extract_servers({c.DISABLED_KEY: {"parked": ["nope"]}})
+    assert entries[0].enabled is False
+    assert entries[0].malformed is True
+
+
+def test_malformed_entry_round_trips_through_save_unchanged():
+    """The cardinal rule: never silently delete what the user had on disk."""
+    cfg = {"mcpServers": {"good": {"command": "npx"}, "bad": "oops"}}
+    servers = c.extract_servers(cfg)
+    out = c.apply_servers(dict(cfg), servers)
+    assert out["mcpServers"]["bad"] == "oops"
+    assert out["mcpServers"]["good"] == {"command": "npx"}
+
+
+def test_editing_a_malformed_entry_retires_the_raw_value():
+    entry = c.extract_servers({"mcpServers": {"bad": "oops"}})[0]
+    entry.set_data({"command": "npx"})
+    assert entry.malformed is False
+    assert entry.config_value() == {"command": "npx"}
+    assert c.apply_servers({}, [entry])["mcpServers"]["bad"] == {"command": "npx"}
+
+
+def test_lint_reports_the_malformed_entry_by_name():
+    servers = c.extract_servers({"mcpServers": {"bad": "oops"}})
+    warnings = c.lint_servers(servers)
+    assert len(warnings) == 1
+    assert "'bad'" in warnings[0]
+    assert "not an object" in warnings[0]
+    assert "str" in warnings[0]
+
+
+def test_lint_still_reports_normal_warnings_alongside_malformed():
+    cfg = {"mcpServers": {"bad": "oops", "sloppy": {"command": "npx", "args": "one two"}}}
+    warnings = c.lint_servers(c.extract_servers(cfg))
+    assert any("not an object" in w for w in warnings)
+    assert any("'args' should be a list" in w for w in warnings)
+
+
+# --------------------------------------------------------------------------- #
+# #73 -- the stale-file merge must not discard BCC-authored keys
+# --------------------------------------------------------------------------- #
+def test_carry_owned_keys_moves_sets_onto_the_reloaded_config():
+    local = {"mcpServers": {}, c.SETS_KEY: {"work": ["a", "b"]}}
+    fresh = {"mcpServers": {"external": {"command": "npx"}}}
+    contested = c.carry_owned_keys(local, fresh)
+    assert contested == []
+    assert fresh[c.SETS_KEY] == {"work": ["a", "b"]}
+    assert fresh["mcpServers"] == {"external": {"command": "npx"}}
+
+
+def test_carry_owned_keys_reports_a_genuine_conflict():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {c.SETS_KEY: {"work": ["a", "b"]}}
+    assert c.carry_owned_keys(local, fresh) == [c.SETS_KEY]
+    assert fresh[c.SETS_KEY] == {"work": ["a"]}  # local wins: BCC owns the key
+
+
+def test_carry_owned_keys_is_quiet_when_both_sides_agree():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {c.SETS_KEY: {"work": ["a"]}}
+    assert c.carry_owned_keys(local, fresh) == []
+
+
+def test_carry_owned_keys_leaves_disk_alone_when_absent_locally():
+    """Can't distinguish 'deleted my last set' from 'never had sets'; keep theirs."""
+    fresh = {c.SETS_KEY: {"remote": ["a"]}}
+    assert c.carry_owned_keys({}, fresh) == []
+    assert fresh[c.SETS_KEY] == {"remote": ["a"]}
+
+
+def test_carry_owned_keys_deep_copies_so_later_edits_do_not_leak():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {}
+    c.carry_owned_keys(local, fresh)
+    local[c.SETS_KEY]["work"].append("b")
+    assert fresh[c.SETS_KEY] == {"work": ["a"]}
+
+
+def test_merge_flow_preserves_sets_and_external_servers(tmp_path):
+    """End-to-end shape of the Merge & save path that lost sets in #73."""
+    path = tmp_path / "claude.json"
+    path.write_text(json.dumps({"mcpServers": {"old": {"command": "old"}}}))
+
+    # BCC loads, user saves a named set and edits servers in memory.
+    local = c.load_config(path)
+    servers = c.extract_servers(local)
+    c.save_server_set(local, "work", servers)
+
+    # Something else rewrites the file underneath us.
+    path.write_text(json.dumps({"mcpServers": {"external": {"command": "new"}}, "other": 1}))
+
+    # Merge & save: reload disk, carry BCC keys, re-apply the user's servers.
+    fresh = c.load_config(path)
+    c.carry_owned_keys(local, fresh)
+    c.apply_servers(fresh, servers)
+    c.write_config(path, fresh)
+
+    saved = c.load_config(path)
+    assert saved[c.SETS_KEY] == {"work": ["old"]}  # the set survived
+    assert saved["other"] == 1  # unrelated external key preserved
+    assert "old" in saved["mcpServers"]  # user's servers re-applied
+
+
+def test_null_server_value_is_malformed_not_mistaken_for_absent():
+    """`{"mcpServers": {"foo": null}}` is legal JSON and a real malformed case,
+    so None must not double as the 'nothing here' sentinel."""
+    entry = c.extract_servers({"mcpServers": {"foo": None}})[0]
+    assert entry.malformed is True
+    assert entry.raw is None
+    assert c.apply_servers({}, [entry])["mcpServers"]["foo"] is None
+
+
+def test_a_normal_entry_is_not_malformed():
+    entry = c.extract_servers({"mcpServers": {"foo": {"command": "npx"}}})[0]
+    assert entry.malformed is False
+    assert entry.raw is c.NO_RAW
+
+
 # --------------------------------------------------------------------------- #
 # #75 -- theming
 # --------------------------------------------------------------------------- #