fix: tolerate non-object server values on load; keep named sets across a merge

Two silent-failure bugs found auditing the v1.3.0 features.

#72 -- extract_servers called dict() on every server value, so a config
that was valid JSON but held a non-object server ("foo": "oops", a
number, a list, null) raised on load. The strict parse succeeded, so the
repair path never saw it, and the call sat outside the load try/except:
an unhandled traceback with the window half-swapped to the new profile.
It also made the #54 schema lint unreachable for the most likely
hand-edit mistake -- the load died before the linter ran.

Malformed values are now preserved verbatim on ServerEntry.raw (behind a
NO_RAW sentinel, since a literal JSON null is itself a malformed entry
worth keeping) and written back untouched on Save, so nothing is silently
deleted. lint_servers names the offending entry instead.

#73 -- the stale-file "Merge & save" path reloaded the file from disk and
re-applied the user's servers, but apply_servers only writes mcpServers
and _disabledMcpServers. Named server sets live under _bccServerSets in
the same file, so a set saved that session was dropped from disk and then
from memory, with no warning, on the path the user picks because it
sounds like the safe one.

BCC-owned keys are now declared in BCC_OWNED_KEYS and carried across by
carry_owned_keys, which reports genuinely contested keys so the status
line can say so. Deliberately one-directional: a key absent locally is
left alone on disk, because 'user deleted their last set' and 'another
machine just added sets' are indistinguishable and deleting someone
else's data is the worse failure.

Closes #72
Closes #73

tests/test_core.py

@@ -2370,3 +2370,143 @@ def test_config_has_unfilled_placeholders_false_after_fill():
 def test_config_has_unfilled_placeholders_checks_env_too():
     cfg = {"command": "uvx", "args": ["mcp-grafana"], "env": {"GRAFANA_URL": "<GRAFANA_URL>"}}
     assert c.config_has_unfilled_placeholders(cfg) is True
+
+
+# --------------------------------------------------------------------------- #
+# #72 -- a server value that isn't a JSON object must not take the load down
+# --------------------------------------------------------------------------- #
+@pytest.mark.parametrize("bad", ["not-a-dict", 123, ["a", "b"], None, True, 1.5])
+def test_extract_servers_survives_non_dict_server_value(bad):
+    entries = c.extract_servers({"mcpServers": {"foo": bad}})
+    assert len(entries) == 1
+    assert entries[0].name == "foo"
+    assert entries[0].data == {}
+    assert entries[0].malformed is True
+    assert entries[0].raw == bad
+
+
+def test_extract_servers_marks_only_the_bad_entry():
+    cfg = {"mcpServers": {"good": {"command": "npx"}, "bad": "oops"}}
+    by_name = {e.name: e for e in c.extract_servers(cfg)}
+    assert by_name["good"].malformed is False
+    assert by_name["good"].data == {"command": "npx"}
+    assert by_name["bad"].malformed is True
+
+
+def test_extract_servers_handles_malformed_disabled_entry():
+    entries = c.extract_servers({c.DISABLED_KEY: {"parked": ["nope"]}})
+    assert entries[0].enabled is False
+    assert entries[0].malformed is True
+
+
+def test_malformed_entry_round_trips_through_save_unchanged():
+    """The cardinal rule: never silently delete what the user had on disk."""
+    cfg = {"mcpServers": {"good": {"command": "npx"}, "bad": "oops"}}
+    servers = c.extract_servers(cfg)
+    out = c.apply_servers(dict(cfg), servers)
+    assert out["mcpServers"]["bad"] == "oops"
+    assert out["mcpServers"]["good"] == {"command": "npx"}
+
+
+def test_editing_a_malformed_entry_retires_the_raw_value():
+    entry = c.extract_servers({"mcpServers": {"bad": "oops"}})[0]
+    entry.set_data({"command": "npx"})
+    assert entry.malformed is False
+    assert entry.config_value() == {"command": "npx"}
+    assert c.apply_servers({}, [entry])["mcpServers"]["bad"] == {"command": "npx"}
+
+
+def test_lint_reports_the_malformed_entry_by_name():
+    servers = c.extract_servers({"mcpServers": {"bad": "oops"}})
+    warnings = c.lint_servers(servers)
+    assert len(warnings) == 1
+    assert "'bad'" in warnings[0]
+    assert "not an object" in warnings[0]
+    assert "str" in warnings[0]
+
+
+def test_lint_still_reports_normal_warnings_alongside_malformed():
+    cfg = {"mcpServers": {"bad": "oops", "sloppy": {"command": "npx", "args": "one two"}}}
+    warnings = c.lint_servers(c.extract_servers(cfg))
+    assert any("not an object" in w for w in warnings)
+    assert any("'args' should be a list" in w for w in warnings)
+
+
+# --------------------------------------------------------------------------- #
+# #73 -- the stale-file merge must not discard BCC-authored keys
+# --------------------------------------------------------------------------- #
+def test_carry_owned_keys_moves_sets_onto_the_reloaded_config():
+    local = {"mcpServers": {}, c.SETS_KEY: {"work": ["a", "b"]}}
+    fresh = {"mcpServers": {"external": {"command": "npx"}}}
+    contested = c.carry_owned_keys(local, fresh)
+    assert contested == []
+    assert fresh[c.SETS_KEY] == {"work": ["a", "b"]}
+    assert fresh["mcpServers"] == {"external": {"command": "npx"}}
+
+
+def test_carry_owned_keys_reports_a_genuine_conflict():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {c.SETS_KEY: {"work": ["a", "b"]}}
+    assert c.carry_owned_keys(local, fresh) == [c.SETS_KEY]
+    assert fresh[c.SETS_KEY] == {"work": ["a"]}  # local wins: BCC owns the key
+
+
+def test_carry_owned_keys_is_quiet_when_both_sides_agree():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {c.SETS_KEY: {"work": ["a"]}}
+    assert c.carry_owned_keys(local, fresh) == []
+
+
+def test_carry_owned_keys_leaves_disk_alone_when_absent_locally():
+    """Can't distinguish 'deleted my last set' from 'never had sets'; keep theirs."""
+    fresh = {c.SETS_KEY: {"remote": ["a"]}}
+    assert c.carry_owned_keys({}, fresh) == []
+    assert fresh[c.SETS_KEY] == {"remote": ["a"]}
+
+
+def test_carry_owned_keys_deep_copies_so_later_edits_do_not_leak():
+    local = {c.SETS_KEY: {"work": ["a"]}}
+    fresh = {}
+    c.carry_owned_keys(local, fresh)
+    local[c.SETS_KEY]["work"].append("b")
+    assert fresh[c.SETS_KEY] == {"work": ["a"]}
+
+
+def test_merge_flow_preserves_sets_and_external_servers(tmp_path):
+    """End-to-end shape of the Merge & save path that lost sets in #73."""
+    path = tmp_path / "claude.json"
+    path.write_text(json.dumps({"mcpServers": {"old": {"command": "old"}}}))
+
+    # BCC loads, user saves a named set and edits servers in memory.
+    local = c.load_config(path)
+    servers = c.extract_servers(local)
+    c.save_server_set(local, "work", servers)
+
+    # Something else rewrites the file underneath us.
+    path.write_text(json.dumps({"mcpServers": {"external": {"command": "new"}}, "other": 1}))
+
+    # Merge & save: reload disk, carry BCC keys, re-apply the user's servers.
+    fresh = c.load_config(path)
+    c.carry_owned_keys(local, fresh)
+    c.apply_servers(fresh, servers)
+    c.write_config(path, fresh)
+
+    saved = c.load_config(path)
+    assert saved[c.SETS_KEY] == {"work": ["old"]}  # the set survived
+    assert saved["other"] == 1  # unrelated external key preserved
+    assert "old" in saved["mcpServers"]  # user's servers re-applied
+
+
+def test_null_server_value_is_malformed_not_mistaken_for_absent():
+    """`{"mcpServers": {"foo": null}}` is legal JSON and a real malformed case,
+    so None must not double as the 'nothing here' sentinel."""
+    entry = c.extract_servers({"mcpServers": {"foo": None}})[0]
+    assert entry.malformed is True
+    assert entry.raw is None
+    assert c.apply_servers({}, [entry])["mcpServers"]["foo"] is None
+
+
+def test_a_normal_entry_is_not_malformed():
+    entry = c.extract_servers({"mcpServers": {"foo": {"command": "npx"}}})[0]
+    assert entry.malformed is False
+    assert entry.raw is c.NO_RAW